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LINC01941 long intergenic non-protein coding RNA 1941 [ Homo sapiens (human) ]

Gene ID: 105373600, updated on 10-Oct-2023

Summary

Official Symbol
LINC01941provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1941provided by HGNC
Primary source
HGNC:HGNC:52764
See related
Ensembl:ENSG00000226813 AllianceGenome:HGNC:52764
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
2q14.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (126110099..126117985, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (126547169..126555055, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (126867676..126875562, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:125752724-125753685 Neighboring gene RNA, U6 small nuclear 259, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:126179643-126180144 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:126180145-126180644 Neighboring gene uncharacterized LOC105373598 Neighboring gene uncharacterized LOC124900611 Neighboring gene long intergenic non-protein coding RNA 1889 Neighboring gene MPRA-validated peak3850 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:126816617-126817305 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:126918657-126919158 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:126919159-126919658 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:126940752-126941297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:127065865-127066365 Neighboring gene MPRA-validated peak3851 silencer Neighboring gene SLC6A14 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:127128995-127129494 Neighboring gene uncharacterized LOC105373601

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146970.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC114813, CR744069
    Related
    ENST00000455174.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    126110099..126117985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    126547169..126555055 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)