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LOC105373592 uncharacterized LOC105373592 [ Homo sapiens (human) ]

Gene ID: 105373592, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105373592
Gene description
uncharacterized LOC105373592
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373592 in Genome Data Viewer
Location:
2q14.3
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (121902453..122432938)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (122337514..122868383)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373590 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:122547721-122548382 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16473 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:122568941-122569442 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:122571203-122571771 Neighboring gene long intergenic non-protein coding RNA 1823 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11924 Neighboring gene VISTA enhancer hs2321 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:122733633-122734140 Neighboring gene Sharpr-MPRA regulatory region 14931 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:122766746-122767301 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:122767302-122767856 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:122775524-122776082 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:122785406-122786605 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:122801540-122802040 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11925 Neighboring gene MPRA-validated peak3841 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr2:122963157-122963658 Neighboring gene MPRA-validated peak3842 silencer Neighboring gene uncharacterized LOC105373591 Neighboring gene MPRA-validated peak3844 silencer Neighboring gene uncharacterized LOC105373593 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:123274025-123274951 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:123277360-123277860 Neighboring gene uncharacterized LOC107985943 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:123418771-123419429

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    121902453..122432938
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001739684.2 RNA Sequence

  2. XR_007087222.1 RNA Sequence

  3. XR_923281.3 RNA Sequence

  4. XR_001739685.2 RNA Sequence

  5. XR_923280.3 RNA Sequence

  6. XR_923282.3 RNA Sequence

  7. XR_923283.3 RNA Sequence

  8. XR_923284.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    122337514..122868383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072454.1 RNA Sequence

  2. XR_007072449.1 RNA Sequence

  3. XR_007072451.1 RNA Sequence

  4. XR_007072450.1 RNA Sequence

  5. XR_007072455.1 RNA Sequence

  6. XR_007072456.1 RNA Sequence

  7. XR_007072452.1 RNA Sequence

  8. XR_007072453.1 RNA Sequence

Nucleotide Protein
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