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LOC105373585 uncharacterized LOC105373585 [ Homo sapiens (human) ]

Gene ID: 105373585, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105373585
Gene description
uncharacterized LOC105373585
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373585 in Genome Data Viewer
Location:
2q14.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (120542905..120554647, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (120978420..120990212, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121110159-121110862 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121110863-121111564 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121114094-121114669 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:121130783-121131676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121133461-121134352 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121152410-121153223 Neighboring gene inhibin subunit beta B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121187849-121188837 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121199691-121200316 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:121209011-121209167 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:121210803-121212002 Neighboring gene NANOG hESC enhancer GRCh37_chr2:121214333-121214894 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:121223679-121224221 Neighboring gene long intergenic non-protein coding RNA 1101 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121256367-121256872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121261397-121261898 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121269051-121269670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121269671-121270289 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:121301087-121302286 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16461 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11919 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121317507-121318008 Neighboring gene NANOG hESC enhancer GRCh37_chr2:121332587-121333189 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121345700-121346593 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121352388-121352896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121355088-121355588 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121355589-121356089 Neighboring gene Sharpr-MPRA regulatory region 1201 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121366968-121367468 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121412505-121413005 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121419009-121419957 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:121426571-121427770 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121463233-121463948 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121466954-121467822 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121467823-121468690 Neighboring gene uncharacterized LOC124906073 Neighboring gene uncharacterized LOC124907881 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121492073-121492720 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_52581 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:121494648-121495148 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:121495149-121495649 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121496056-121496893 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121496894-121497730 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:121497887-121498529 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:121498530-121499171 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121503217-121503718 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121510854-121511369 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121515981-121516842 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121526109-121526644 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121531159-121531669 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121540897-121541818 Neighboring gene Sharpr-MPRA regulatory region 398 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121543663-121544585 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121545508-121546430 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121547621-121548252 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121552862-121553525 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121562057-121562706 Neighboring gene GLI family zinc finger 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121565847-121566347 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121579379-121580044 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121580881-121581688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121581689-121582496 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121582497-121583304 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121590494-121591486 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121603734-121604234 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121613936-121614585 Neighboring gene uncharacterized LOC124907880

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    120542905..120554647 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002959417.2 RNA Sequence

  2. XR_007087218.1 RNA Sequence

  3. XR_001739681.3 RNA Sequence

  4. XR_007087217.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    120978420..120990212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072440.1 RNA Sequence

  2. XR_007072438.1 RNA Sequence

  3. XR_007072439.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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