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LOC105373479 uncharacterized LOC105373479 [ Homo sapiens (human) ]

Gene ID: 105373479, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105373479
Gene description
uncharacterized LOC105373479
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373479 in Genome Data Viewer
Location:
2p25.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (689355..692017, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (688820..691482, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373352 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:562669-563218 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:582585-583784 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:602328-603527 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:608557-609756 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:620290-620879 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:660609-661184 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:673893-674394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:674395-674894 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:676681-677446 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15217 Neighboring gene transmembrane protein 18 Neighboring gene TMEM18 divergent transcript Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:690095-690594 Neighboring gene uncharacterized LOC105373358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15218 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:720518-721018 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:725085-725586 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:726648-727445 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:727446-728242 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:729041-729836 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:729837-730634 Neighboring gene uncharacterized LOC105373480 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:766549-767048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:776200-776860

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    689355..692017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086154.1 RNA Sequence

  2. XR_001739249.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    688820..691482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071743.1 RNA Sequence

  2. XR_007071742.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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