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LAPTM4A-DT LAPTM4A divergent transcript [ Homo sapiens (human) ]

Gene ID: 105373463, updated on 25-Oct-2023

Summary

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Official Symbol
LAPTM4A-DTprovided by HGNC
Official Full Name
LAPTM4A divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:54382
See related
Ensembl:ENSG00000223734 AllianceGenome:HGNC:54382
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.5) and kidney (RPKM 0.2) See more
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Genomic context

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See LAPTM4A-DT in Genome Data Viewer
Location:
2p24.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (20052137..20117879)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (20085682..20151431)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene WDR35 divergent transcript Neighboring gene matrilin 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:20211533-20212145 Neighboring gene lysosomal protein transmembrane 4 alpha Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15373 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15374 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:20280320-20280876 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:20280877-20281433 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:20291019-20291520 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:20291521-20292020 Neighboring gene Sharpr-MPRA regulatory region 8017 Neighboring gene uncharacterized LOC107985807 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:20335699-20336318 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:20336319-20336938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:20336939-20337558 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:20341040-20341624 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15375 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15376 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15377 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15378 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15379 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15380 Neighboring gene ribosomal protein S16 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187142.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC098828

  2. NR_187143.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC098828
    Related
    ENST00000452342.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    20052137..20117879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    20085682..20151431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases