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LOC105373417 uncharacterized LOC105373417 [ Homo sapiens (human) ]

Gene ID: 105373417, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105373417
Gene description
uncharacterized LOC105373417
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373417 in Genome Data Viewer
Location:
2p25.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (9135020..9145910, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (9156697..9169709, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373414 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:9244583-9245782 Neighboring gene uncharacterized LOC105373416 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:9252361-9252888 Neighboring gene uncharacterized LOC105373415 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:9269636-9269796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:9279832-9280332 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:9282151-9283048 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15275 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:9289685-9290604 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:9319676-9320875 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:9346090-9347022 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:9347023-9347953 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:9357948-9358822 Neighboring gene Sharpr-MPRA regulatory region 15524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:9371198-9371754 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:9371755-9372309 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:9374524-9375723 Neighboring gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:9427423-9428622 Neighboring gene eukaryotic translation initiation factor 1 pseudogene 7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:9439781-9440280 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:9495983-9497182 Neighboring gene Sharpr-MPRA regulatory region 10317 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:9513595-9514143 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:9514144-9514692 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:9518857-9519441 Neighboring gene uncharacterized LOC124907730

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    9135020..9145910 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_922775.1 RNA Sequence

  2. XR_922776.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    9156697..9169709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071775.1 RNA Sequence

  2. XR_007071774.1 RNA Sequence

  3. XR_007071776.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials