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TMEM18-DT TMEM18 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105373354, updated on 10-Oct-2023

Summary

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Official Symbol
TMEM18-DTprovided by HGNC
Official Full Name
TMEM18 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:54481
See related
Ensembl:ENSG00000233296 AllianceGenome:HGNC:54481
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in ovary (RPKM 1.2), testis (RPKM 1.0) and 25 other tissues See more
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Genomic context

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Location:
2p25.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (677372..682863)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (676843..682331)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:551220-551720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:551721-552221 Neighboring gene long intergenic non-protein coding RNA 1875 Neighboring gene uncharacterized LOC105373352 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:562669-563218 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:582585-583784 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:602328-603527 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:608557-609756 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:620290-620879 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:660609-661184 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:673893-674394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:674395-674894 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:676681-677446 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15217 Neighboring gene transmembrane protein 18 Neighboring gene uncharacterized LOC105373479 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:690095-690594 Neighboring gene uncharacterized LOC105373358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15218 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:720518-721018 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:725085-725586 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:726648-727445 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:727446-728242 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:729041-729836 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:729837-730634

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genetic Variants in AC092159.2 and Risk of Gestational Diabetes Mellitus in a Chinese Population. Hu D, et al. DNA Cell Biol, 2019 Oct. PMID 31361511

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC092159.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183416.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092159

  2. NR_183417.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092159
    Related
    ENST00000445418.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    677372..682863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    676843..682331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases