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SAT1-DT SAT1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105373148, updated on 10-Oct-2023

Summary

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Official Symbol
SAT1-DTprovided by HGNC
Official Full Name
SAT1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:56726
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
lnc-ACOT9-1
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
Xp22.11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (23748942..23782986, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (23332545..23366669, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 11823 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20704 Neighboring gene peroxiredoxin 4 Neighboring gene acyl-CoA thioesterase 9 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29490 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20705 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:23770819-23771006 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:23798968-23799606 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chrX:23800811-23802010 Neighboring gene uncharacterized LOC127933115 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chrX:23825194-23826393 Neighboring gene spermidine/spermine N1-acetyltransferase 1 Neighboring gene ribosomal protein L9 pseudogene 7 Neighboring gene apolipoprotein O

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Long non-coding RNAs as novel therapeutic targets in juvenile myelomonocytic leukemia. Hofmans M, et al. Sci Rep, 2021 Feb 2. PMID 33531590, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184056.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131011

  2. NR_184057.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131011

  3. NR_184058.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131011

  4. NR_184059.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131011

  5. NR_184060.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131011

  6. NR_184061.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131011

  7. NR_184062.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131011

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    23748942..23782986 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    23332545..23366669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases