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LOC105373080 uncharacterized LOC105373080 [ Homo sapiens (human) ]

Gene ID: 105373080, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105373080
Gene description
uncharacterized LOC105373080
See related
Ensembl:ENSG00000299267
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373080 in Genome Data Viewer
Location:
22q13.32
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (48340030..48340699)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (48832505..48833174)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak4510 silencer Neighboring gene uncharacterized LOC107985581 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:48580642-48580843 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:48634595-48635478 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:48635479-48636360 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:48636361-48637242 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48640140-48640640 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48649439-48649939 Neighboring gene meiotic recombination hotspot 22A Neighboring gene microRNA 3201 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48698373-48698874 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48698875-48699374 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48700689-48701192 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48701193-48701696 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48701697-48702200 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48704048-48704548 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48708440-48709077 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:48709078-48709714 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48719315-48719816 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48736673-48737298 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48737299-48737924 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:48741753-48742340 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:48742341-48742928 Neighboring gene uncharacterized LOC105373081 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:48765615-48766210 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48772420-48772926 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48772927-48773431 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48792732-48793724 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:48810064-48810602 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:48810603-48811140 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48819797-48820788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48828944-48829484 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:48831787-48832288 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19276 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr22:48841523-48842722 Neighboring gene uncharacterized LOC124905142

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    48340030..48340699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_938324.3 RNA Sequence

    Related
    ENST00000762036.1

  2. XR_938323.3 RNA Sequence

    Related
    ENST00000762035.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    48832505..48833174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090732.1 RNA Sequence

  2. XR_007090733.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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