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LOC105373071 uncharacterized LOC105373071 [ Homo sapiens (human) ]

Gene ID: 105373071, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105373071
Gene description
uncharacterized LOC105373071
Gene type
protein coding
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373071 in Genome Data Viewer
Location:
22q13.31
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (45866749..45894416)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (46355228..46379112)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene ataxin 10 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46158531-46159124 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:46164292-46164865 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13887 Neighboring gene microRNA 4762 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13888 Neighboring gene origin of replication for ATXN10 repeat region Neighboring gene ataxin 10 repeat instability region Neighboring gene TRNT1 pseudogene 2 Neighboring gene VISTA enhancer hs1559 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46263223-46263797 Neighboring gene uncharacterized LOC107985535 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46275792-46276707 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46276708-46277622 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46291489-46292372 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46292373-46293254 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46331075-46331575 Neighboring gene Wnt family member 7B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46358809-46359309 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46362863-46363759 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:46364456-46365655 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13889 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46382740-46383240 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46383241-46383741 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46388443-46388942 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46391059-46391977 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46392941-46393610 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19230 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46402157-46403148 Neighboring gene dynein heavy chain -like pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General protein information

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Preferred Names
uncharacterized protein LOC105373071

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    45866749..45894416
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047441693.1 → XP_047297649.1  uncharacterized protein LOC105373071

RNA

  1. XR_007068133.1 RNA Sequence

  2. XR_007068131.1 RNA Sequence

  3. XR_007068134.1 RNA Sequence

  4. XR_007068132.1 RNA Sequence

  5. XR_007068135.1 RNA Sequence

  6. XR_001755591.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    46355228..46379112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047447047.1 → XP_047303003.1  uncharacterized protein LOC105373071

RNA

  1. XR_007090720.1 RNA Sequence

  2. XR_007090718.1 RNA Sequence

  3. XR_007090721.1 RNA Sequence

  4. XR_007090719.1 RNA Sequence

  5. XR_007090722.1 RNA Sequence

  6. XR_007090723.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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