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LINC01639 long intergenic non-protein coding RNA 1639 [ Homo sapiens (human) ]

Gene ID: 105373054, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01639provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1639provided by HGNC
Primary source
HGNC:HGNC:52426
See related
Ensembl:ENSG00000236117 AllianceGenome:HGNC:52426
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
22q13.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (43400331..43409681)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (43881415..43890765)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (43796337..43805687)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene signal peptide, CUB domain and EGF like domain containing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43673726-43674226 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43678267-43678767 Neighboring gene SCUBE1 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43689171-43689688 Neighboring gene Sharpr-MPRA regulatory region 12495 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43696443-43696944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43696945-43697444 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:43708128-43708708 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:43708709-43709288 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43709955-43710456 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:43724267-43725041 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:43725042-43725815 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:43742520-43742665 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43765639-43766140 Neighboring gene uncharacterized LOC105373053 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:43784068-43784646 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:43784647-43785225 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43823805-43824306 Neighboring gene MPRA-validated peak4505 silencer Neighboring gene metallophosphoesterase domain containing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43860857-43861358 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43883063-43883836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43883837-43884610 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43910482-43911240 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:43923573-43924072 Neighboring gene EFCAB6 antisense RNA 1 Neighboring gene EF-hand calcium binding domain 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146918.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FP325334
    Related
    ENST00000450750.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    43400331..43409681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    43881415..43890765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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