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LOC105373007 uncharacterized LOC105373007 [ Homo sapiens (human) ]

Gene ID: 105373007, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105373007
Gene description
uncharacterized LOC105373007
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373007 in Genome Data Viewer
Location:
22q12.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (33573779..33589064)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (34031319..34046590)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene LARGE xylosyl- and glucuronyltransferase 1 Neighboring gene uncharacterized LOC124905106 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18878 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18879 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18880 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18881 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr22:33833834-33835033 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18882 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18883 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18884 Neighboring gene microRNA 4764 Neighboring gene MPRA-validated peak4484 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18885 Neighboring gene Sharpr-MPRA regulatory region 960 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13645 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:34018247-34018422 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:34118270-34118798 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:34134097-34134616 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:34134617-34135136 Neighboring gene small nucleolar RNA, H/ACA box 50B Neighboring gene LARGE antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    33573779..33589064
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_938183.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    34031319..34046590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090601.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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