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LOC105372979 uncharacterized LOC105372979 [ Homo sapiens (human) ]

Gene ID: 105372979, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105372979
Gene description
uncharacterized LOC105372979
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372979 in Genome Data Viewer
Location:
22q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (27320940..27322221, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (27781864..27783145, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:27622369-27623568 Neighboring gene long intergenic non-protein coding RNA 1638 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27654930-27655430 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27655431-27655931 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27692319-27692881 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:27706583-27707357 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:27707358-27708131 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:27710082-27710283 Neighboring gene long intergenic non-protein coding RNA 2554 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63195 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63191 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63206 Neighboring gene Sharpr-MPRA regulatory region 9271 Neighboring gene uncharacterized LOC102724900 Neighboring gene NANOG hESC enhancer GRCh37_chr22:27754348-27754896 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:27769315-27769815 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27803625-27804177 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:27828998-27829600 Neighboring gene uncharacterized LOC105372980 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27833795-27834458

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    27320940..27322221 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_938121.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    27781864..27783145 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090539.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
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