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LINC02559 long intergenic non-protein coding RNA 2559 [ Homo sapiens (human) ]

Gene ID: 105372972, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02559provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2559provided by HGNC
Primary source
HGNC:HGNC:53598
See related
AllianceGenome:HGNC:53598
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02559 in Genome Data Viewer
Location:
22q12.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (26152151..26164303)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (26614425..26626574)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene myosin XVIIIB Neighboring gene MYO18B antisense RNA 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:26331174-26331797 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:26338651-26339188 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:26339189-26339725 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:26366162-26366954 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:26366955-26367745 Neighboring gene RN7SK pseudogene 169 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:26388463-26388963 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr22:26462043-26462848 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr22:26462849-26463654 Neighboring gene uncharacterized LOC102724801 Neighboring gene uncharacterized LOC105372971 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13565 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:26566407-26567346 Neighboring gene seizure related 6 homolog like Neighboring gene Sharpr-MPRA regulatory region 5864 Neighboring gene SEZ6L antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:26716892-26717858 Neighboring gene uncharacterized LOC124905096

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    26152151..26164303
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_938105.2 RNA Sequence

  2. XR_938103.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    26614425..26626574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090535.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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