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LOC105372971 uncharacterized LOC105372971 [ Homo sapiens (human) ]

Gene ID: 105372971, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105372971
Gene description
uncharacterized LOC105372971
See related
Ensembl:ENSG00000229770
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372971 in Genome Data Viewer
Location:
22q12.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (26161903..26169234, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (26624177..26631509, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (26557869..26565200, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene myosin XVIIIB Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:26366162-26366954 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:26366955-26367745 Neighboring gene RN7SK pseudogene 169 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:26388463-26388963 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr22:26462043-26462848 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr22:26462849-26463654 Neighboring gene uncharacterized LOC102724801 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13565 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:26566407-26567346 Neighboring gene long intergenic non-protein coding RNA 2559 Neighboring gene seizure related 6 homolog like Neighboring gene Sharpr-MPRA regulatory region 5864 Neighboring gene SEZ6L antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:26716892-26717858 Neighboring gene uncharacterized LOC124905096

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Other Names

  • CTA-796E4.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188585.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022337
    Related
    ENST00000650717.1

  2. NR_188586.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022337

  3. NR_188587.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022337
    Related
    ENST00000652418.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    26161903..26169234 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    26624177..26631509 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials