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LOC105372825 uncharacterized LOC105372825 [ Homo sapiens (human) ]

Gene ID: 105372825, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105372825
Gene description
uncharacterized LOC105372825
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372825 in Genome Data Viewer
Location:
21q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (43778627..43779191, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (42134241..42134802, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene pyridoxal kinase Neighboring gene uncharacterized LOC105372824 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45157073-45157572 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45159504-45160242 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45160243-45160981 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45183829-45184574 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45184575-45185320 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45186633-45187246 Neighboring gene PDXK-CSTB intergenic CAGE-defined low expression enhancer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45189831-45190753 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45190754-45191675 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13368 Neighboring gene cystatin B upstream repeat instability region Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45198401-45199200 Neighboring gene cystatin B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45206281-45206822 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45206823-45207363 Neighboring gene transmembrane protein 97 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13369 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18548 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13370 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:45211808-45212020 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45213337-45213836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45213839-45214490 Neighboring gene ribosomal RNA processing 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18549

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    43778627..43779191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_937776.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    42134241..42134802 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090217.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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