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LOC105372809 uncharacterized LOC105372809 [ Homo sapiens (human) ]

Gene ID: 105372809, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105372809
Gene description
uncharacterized LOC105372809
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
21q22.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (41552804..41581344, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (39941995..39970531, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene TMPRSS2 E3 enhancer Neighboring gene uncharacterized LOC124905021 Neighboring gene TMPRSS2 E4 enhancer Neighboring gene small nucleolar RNA SNORA32 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:42918133-42918311 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:42931079-42932278 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:42934014-42934514 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:42934515-42935015 Neighboring gene TMPRSS2 androgen receptor-responsive -60 kb enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18483 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr21:42952959-42954158 Neighboring gene prostate cancer expressed EZH2 associated transcript Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:43024594-43025470 Neighboring gene uncharacterized LOC124905060 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:43025471-43026346 Neighboring gene Sharpr-MPRA regulatory region 1599 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:43032765-43033428 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:43040871-43041391 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:43042456-43043655 Neighboring gene uncharacterized LOC105372812

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AP001610.9, AP006748.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    41552804..41581344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_937738.1 RNA Sequence

  2. XR_937739.1 RNA Sequence

  3. XR_007067871.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    39941995..39970531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090187.1 RNA Sequence

  2. XR_007090188.1 RNA Sequence

  3. XR_007090186.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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