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LINC01666 long intergenic non-protein coding RNA 1666 [ Homo sapiens (human) ]

Gene ID: 105372730, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01666provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1666provided by HGNC
Primary source
HGNC:HGNC:52454
See related
AllianceGenome:HGNC:52454
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
21p11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (8759079..8805958)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (7632524..7679401, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene RNA, 45S pre-ribosomal N1 Neighboring gene RNA, 28S ribosomal N1 Neighboring gene cell division cycle 27 pseudogene 11 Neighboring gene uncharacterized LOC124904994 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:9653155-9653716 Neighboring gene MPRA-validated peak4328 silencer Neighboring gene MPRA-validated peak4329 silencer Neighboring gene translation initiation factor IF-2-like Neighboring gene MPRA-validated peak4330 silencer Neighboring gene sorting nexin 18 pseudogene 10 Neighboring gene uncharacterized LOC124904996

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • bP-2189O9.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187559.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CR381670

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    8759079..8805958
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    7632524..7679401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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