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LOC105372711 uncharacterized LOC105372711 [ Homo sapiens (human) ]

Gene ID: 105372711, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105372711
Gene description
uncharacterized LOC105372711
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.7) See more
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Genomic context

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See LOC105372711 in Genome Data Viewer
Location:
20q13.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (62480452..62491198)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (64277449..64288197)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61012716-61013216 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61016724-61017224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61017225-61017725 Neighboring gene Sharpr-MPRA regulatory region 3586 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61048659-61049319 Neighboring gene GATA binding protein 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61059580-61060461 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61060462-61061342 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:61065697-61065904 Neighboring gene uncharacterized LOC124904947 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18203 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61071135-61071640 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61071641-61072147 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61075123-61075623 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61086501-61087310 Neighboring gene uncharacterized LOC105376995

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    62480452..62491198
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001754702.2 RNA Sequence

  2. XR_007067706.1 RNA Sequence

  3. XR_007067703.1 RNA Sequence

  4. XR_001754703.2 RNA Sequence

  5. XR_007067705.1 RNA Sequence

  6. XR_007067704.1 RNA Sequence

  7. XR_007067702.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    64277449..64288197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089491.1 RNA Sequence

  2. XR_007089497.1 RNA Sequence

  3. XR_007089494.1 RNA Sequence

  4. XR_007089492.1 RNA Sequence

  5. XR_007089496.1 RNA Sequence

  6. XR_007089495.1 RNA Sequence

  7. XR_007089493.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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