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FAM242A family with sequence similarity 242 member A [ Homo sapiens (human) ]

Gene ID: 105372587, updated on 26-Oct-2023

Summary

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Official Symbol
FAM242Aprovided by HGNC
Official Full Name
family with sequence similarity 242 member Aprovided by HGNC
Primary source
HGNC:HGNC:51597
See related
Ensembl:ENSG00000231934 AllianceGenome:HGNC:51597
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01598
Expression
Restricted expression toward testis (RPKM 1.2) See more
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Genomic context

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Location:
20q11.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (30323311..30361975, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (30434038..30472725)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene putative uncharacterized protein LOC401522 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:29525309-29525509 Neighboring gene uncharacterized LOC105372586 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:29556392-29556584 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:29618678-29619179 Neighboring gene FSHD region gene 1 family member B, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:29645466-29645978 Neighboring gene Sharpr-MPRA regulatory region 7852 Neighboring gene MLLT10 pseudogene 1 Neighboring gene RNA, 5.8S ribosomal pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • long intergenic non-protein coding RNA 1598

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187586.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL121762, AL441988

  2. NR_187587.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL121762, AL441988

  3. NR_187588.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL121762, AL441988
    Related
    ENST00000664146.1

  4. NR_187589.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL121762, AL441988
    Related
    ENST00000657151.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    30323311..30361975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    30434038..30472725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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