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LOC105372529 uncharacterized LOC105372529 [ Homo sapiens (human) ]

Gene ID: 105372529, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105372529
Gene description
uncharacterized LOC105372529
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372529 in Genome Data Viewer
Location:
20p12.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (11309808..11427294, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (11353464..11470954, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372528 Neighboring gene NANOG hESC enhancer GRCh37_chr20:11229310-11229856 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:11241778-11242278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:11242279-11242779 Neighboring gene uncharacterized LOC124904960 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:11247394-11248593 Neighboring gene Sharpr-MPRA regulatory region 8773 Neighboring gene uncharacterized LOC339593 Neighboring gene ribosomal protein S11 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17548 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:11517622-11518319 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:11589151-11589652 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:11589653-11590152 Neighboring gene LIN28A pseudogene 3 Neighboring gene phosphoglycerate mutase 3, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    11309808..11427294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_937261.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    11353464..11470954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089855.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials