U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02841 long intergenic non-protein coding RNA 2841 [ Homo sapiens (human) ]

Gene ID: 105372360, updated on 10-Oct-2023

Summary

Official Symbol
LINC02841provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2841provided by HGNC
Primary source
HGNC:HGNC:54376
See related
Ensembl:ENSG00000267407 AllianceGenome:HGNC:54376
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.0) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
19q12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (31520187..31554803)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (34038768..34073408)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1791 Neighboring gene teashirt zinc finger homeobox 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31702527-31703027 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31744812-31745810 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31745811-31746808 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:31779704-31780204 Neighboring gene NANOG hESC enhancer GRCh37_chr19:31809776-31810277 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31831709-31832233 Neighboring gene TSHZ3 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31843549-31844050 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31844051-31844550 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31845493-31846136 Neighboring gene uncharacterized LOC124904794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31879539-31880040 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr19:31909131-31910077 Neighboring gene Sharpr-MPRA regulatory region 8466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31939361-31939861 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31990532-31991116 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31991117-31991701 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr19:32043944-32045143 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:32065114-32065673 Neighboring gene long intergenic non-protein coding RNA 3103 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:32129182-32129347 Neighboring gene RNA, 5S ribosomal pseudogene 471

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184026.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008794
    Related
    ENST00000664841.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    31520187..31554803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    34038768..34073408
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)