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LOC105372321 uncharacterized LOC105372321 [ Homo sapiens (human) ]

Gene ID: 105372321, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105372321
Gene description
uncharacterized LOC105372321
See related
Ensembl:ENSG00000268119
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in ovary (RPKM 3.3), bone marrow (RPKM 0.7) and 6 other tissues See more
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Genomic context

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See LOC105372321 in Genome Data Viewer
Location:
19p12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (21440699..21463904, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (21579225..21602433, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (21623501..21646706, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 738 Neighboring gene iron-sulfur cluster assembly 1 pseudogene 7 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:21579974-21580212 Neighboring gene zinc finger protein 493 Neighboring gene MPRA-validated peak3410 silencer Neighboring gene MPRA-validated peak3411 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:21643213-21643712 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:21646023-21646921 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:21657297-21657950 Neighboring gene long intergenic non-protein coding RNA 664 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:21688185-21688787 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:21688788-21689389 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:21694415-21695021 Neighboring gene zinc finger protein 429 Neighboring gene BCL2 interacting protein 3 pseudogene 26

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187815.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010615

  2. NR_187816.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010615

  3. NR_187817.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010615

  4. NR_187818.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010615

  5. NR_187819.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010615

  6. NR_187820.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010615

  7. NR_187821.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010615

  8. NR_187822.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010615
    Related
    ENST00000801768.1

  9. NR_187823.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010615
    Related
    ENST00000600469.8

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    21440699..21463904 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    21579225..21602433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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