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LOC105372220 uncharacterized LOC105372220 [ Homo sapiens (human) ]

Gene ID: 105372220, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105372220
Gene description
uncharacterized LOC105372220
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372220 in Genome Data Viewer
Location:
18q23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (78556094..78558962, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (78791016..78793884, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 655, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75842390-75842890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75842891-75843391 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:75844334-75845533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75848151-75848652 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:75898411-75899054 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:75899055-75899698 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75899699-75900342 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75934781-75935281 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:75936086-75937285 Neighboring gene NANOG hESC enhancer GRCh37_chr18:75967979-75968517 Neighboring gene VISTA enhancer hs634 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76027952-76028452 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76028453-76028953 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76056703-76057204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76057205-76057704 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:76254093-76255292 Neighboring gene uncharacterized LOC105372219 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:76302140-76303339 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:76322286-76322827 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:76322828-76323368 Neighboring gene NANOG hESC enhancer GRCh37_chr18:76333901-76334402 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:76336458-76337657 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:76391650-76392849 Neighboring gene uncharacterized LOC105372221 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76399811-76400311 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:76406811-76408010 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76419597-76420098 Neighboring gene uncharacterized LOC124904330

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    78556094..78558962 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_935674.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003315958.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    62628..65496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_952158.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187665.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    62628..65496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_952513.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    78791016..78793884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088530.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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