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LOC105372061 uncharacterized LOC105372061 [ Homo sapiens (human) ]

Gene ID: 105372061, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105372061
Gene description
uncharacterized LOC105372061
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in brain (RPKM 7.8), prostate (RPKM 2.7) and 16 other tissues See more
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Genomic context

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See LOC105372061 in Genome Data Viewer
Location:
18q12.1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (34892016..34943367, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (35082975..35135249, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene dystrobrevin alpha Neighboring gene ribosomal protein L10a pseudogene 13 Neighboring gene uncharacterized LOC124904281 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:32239357-32239860 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:32239861-32240364 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:32427354-32428159 Neighboring gene Sharpr-MPRA regulatory region 11937 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13216 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13217 Neighboring gene Sharpr-MPRA regulatory region 7107 Neighboring gene Sharpr-MPRA regulatory region 2105 Neighboring gene uncharacterized LOC124904282 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9394 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:32558231-32559430 Neighboring gene microtubule associated protein RP/EB family member 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13218 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:32630340-32630840 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13219 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:32718769-32719764

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    34892016..34943367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007066333.1 RNA Sequence

  2. XR_007066334.1 RNA Sequence

  3. XR_935370.3 RNA Sequence

  4. XR_002958217.2 RNA Sequence

  5. XR_001753406.3 RNA Sequence

  6. XR_001753404.2 RNA Sequence

  7. XR_007066332.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    35082975..35135249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088267.1 RNA Sequence

  2. XR_007088269.1 RNA Sequence

  3. XR_007088266.1 RNA Sequence

  4. XR_007088264.1 RNA Sequence

  5. XR_007088268.1 RNA Sequence

  6. XR_007088265.1 RNA Sequence

  7. XR_007088263.1 RNA Sequence

Nucleotide Protein
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