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LINC01894 long intergenic non-protein coding RNA 1894 [ Homo sapiens (human) ]

Gene ID: 105372030, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01894provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1894provided by HGNC
Primary source
HGNC:HGNC:52713
See related
Ensembl:ENSG00000264345 AllianceGenome:HGNC:52713
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in spleen (RPKM 1.4), heart (RPKM 0.2) and 3 other tissues See more
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Genomic context

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Location:
18q11.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (24932774..24987979, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (25127115..25182158, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (22512738..22567943, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372028 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47845 Neighboring gene NANOG hESC enhancer GRCh37_chr18:22355329-22355830 Neighboring gene uncharacterized LOC105372029 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr18:22397209-22397842 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:22404776-22404976 Neighboring gene NANOG hESC enhancer GRCh37_chr18:22442499-22443000 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:22446838-22447019 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:22503864-22504549 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9369 Neighboring gene NANOG hESC enhancer GRCh37_chr18:22559116-22559673 Neighboring gene MPRA-validated peak3077 silencer Neighboring gene VISTA enhancer hs1180 Neighboring gene uncharacterized LOC107985141 Neighboring gene WW domain binding protein 2 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146903.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC018697, AC104961
    Related
    ENST00000670277.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    24932774..24987979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    25127115..25182158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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