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LINC01928 long intergenic non-protein coding RNA 1928 [ Homo sapiens (human) ]

Gene ID: 105371994, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01928provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1928provided by HGNC
Primary source
HGNC:HGNC:52750
See related
Ensembl:ENSG00000267425 AllianceGenome:HGNC:52750
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01928 in Genome Data Viewer
Location:
18p11.21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (11454478..11465996)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (11616638..11628148)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (11454477..11465995)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene solute carrier family 41 member 2 pseudogene Neighboring gene uncharacterized LOC107985173 Neighboring gene uncharacterized LOC124904250 Neighboring gene uncharacterized LOC105371995 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:11426771-11427006 Neighboring gene long intergenic non-protein coding RNA 1255 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:11519045-11519545 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9299 Neighboring gene solute carrier family 35 member G4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146901.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP005229, CR744191
    Related
    ENST00000591029.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    11454478..11465996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    11616638..11628148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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