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LINC01892 long intergenic non-protein coding RNA 1892 [ Homo sapiens (human) ]

Gene ID: 105371969, updated on 10-Oct-2023

Summary

Official Symbol
LINC01892provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1892provided by HGNC
Primary source
HGNC:HGNC:52711
See related
Ensembl:ENSG00000265514 AllianceGenome:HGNC:52711
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01892 in Genome Data Viewer
Location:
18p11.31
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (5081182..5098780)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (5243454..5261052)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (5081181..5098779)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371968 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:4494750-4495406 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:4603865-4604091 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:4753197-4753409 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:4854578-4855210 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr18:4917478-4918174 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:4944402-4944590 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:4987693-4988334 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:4988335-4988974 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:5004401-5004943 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:5038078-5038592 Neighboring gene peptidylprolyl isomerase A pseudogene 14 Neighboring gene NANOG hESC enhancer GRCh37_chr18:5097103-5097620 Neighboring gene biorientation of chromosomes in cell division 1 pseudogene 2 Neighboring gene A-kinase anchor inhibitor 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146900.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA436835, AA442592, AP005380, DB074698
    Related
    ENST00000661003.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    5081182..5098780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    5243454..5261052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)