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LINC02079 long intergenic non-protein coding RNA 2079 [ Homo sapiens (human) ]

Gene ID: 105371766, updated on 10-Oct-2023

Summary

Official Symbol
LINC02079provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2079provided by HGNC
Primary source
HGNC:HGNC:52927
See related
Ensembl:ENSG00000266013 AllianceGenome:HGNC:52927
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
17q12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (39026715..39027110, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (39890559..39890954, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (37182968..37183363, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:37085946-37086491 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:37086492-37087038 Neighboring gene LASP1 neighbor Neighboring gene F-box protein 47 Neighboring gene uncharacterized LOC105371767 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr17:37168027-37168564 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:37168565-37169102 Neighboring gene leucine rich repeat containing 37 member A11, pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr17:37202329-37203528 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8447 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:37228227-37229015 Neighboring gene RDM1 pseudogene 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12086 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12087 Neighboring gene plexin domain containing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:37239721-37240221 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:37243560-37244060

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135645.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX103390
    Related
    ENST00000582518.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    39026715..39027110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    39890559..39890954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)