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RC3H1-DT RC3H1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105371620, updated on 10-Oct-2023

Summary

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Official Symbol
RC3H1-DTprovided by HGNC
Official Full Name
RC3H1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:54295
See related
AllianceGenome:HGNC:54295
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC02776
Expression
Biased expression in testis (RPKM 3.7) and bone marrow (RPKM 0.2) See more
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Genomic context

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Location:
1q25.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (174022483..174023190)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (173380416..173381123)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904457 Neighboring gene RNA, 5S ribosomal pseudogene 67 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:173915901-173917100 Neighboring gene ring finger and CCCH-type domains 1 Neighboring gene RNA, 5S ribosomal pseudogene 68 Neighboring gene MPRA-validated peak465 silencer Neighboring gene MPRA-validated peak466 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2119 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:173990305-173990844 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1558 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1559 Neighboring gene RNA, U7 small nuclear 78 pseudogene Neighboring gene ribosomal protein L30 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • long intergenic non-protein coding RNA 2776

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187284.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL121983

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    174022483..174023190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    173380416..173381123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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