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LOC105371574 uncharacterized LOC105371574 [ Homo sapiens (human) ]

Gene ID: 105371574, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105371574
Gene description
uncharacterized LOC105371574
See related
Ensembl:ENSG00000235979
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.1) See more
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Genomic context

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See LOC105371574 in Genome Data Viewer
Location:
17p11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (19439142..19460971, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (19387171..19409096, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (19342455..19364284, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ring finger protein 112 Neighboring gene long intergenic non-protein coding RNA 2094 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:19336510-19337048 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:19344229-19345013 Neighboring gene ribosomal protein S2 pseudogene 46 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19356211-19356712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19356713-19357212 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19361301-19361846 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19361847-19362393 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:19362394-19362939 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:19363487-19364033 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19364034-19364580 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19366221-19366766 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19374315-19374824 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19378419-19379256 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:19384743-19385658 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:19385659-19386572 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:19395941-19396458 Neighboring gene ribosomal protein L17 pseudogene 43 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:19408793-19409392 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8293 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8294 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8295 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8296 Neighboring gene tRNA-Trp (anticodon CCA) 2-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Clone Names

  • AC004448.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188340.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004448

  2. NR_188341.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004448
    Related
    ENST00000456537.7

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    19439142..19460971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    19387171..19409096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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