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LINC02090 long intergenic non-protein coding RNA 2090 [ Homo sapiens (human) ]

Gene ID: 105371562, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02090provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2090provided by HGNC
Primary source
HGNC:HGNC:52941
See related
Ensembl:ENSG00000230969 AllianceGenome:HGNC:52941
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
17p11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (16988329..16990176)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (16934410..16936257)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (16891643..16893490)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16841792-16842632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16846756-16847256 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16847257-16847757 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16847819-16848342 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16848867-16849390 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16849391-16849914 Neighboring gene TNF receptor superfamily member 13B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11774 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11775 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11776 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11777 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11778 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11779 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11780 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16884947-16885486 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11781 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16885487-16886025 Neighboring gene uncharacterized LOC284191 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16890303-16891133 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11784 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16899244-16899806 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11785 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16908048-16908576 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16914402-16915394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16923086-16924033 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16932678-16933252 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11786 Neighboring gene uncharacterized LOC124903938 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8233 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:16946458-16947657 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16959278-16959917 Neighboring gene myosin phosphatase Rho interacting protein Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16975468-16975993 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16975994-16976520 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16991083-16991584 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16999002-16999588 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:17011600-17012124 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11787 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:17022544-17023069 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:17029831-17030330 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:17030795-17031296 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:17031297-17031796 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:17034927-17035431 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11788 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:17043984-17044574 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:17045275-17045817 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:17045818-17046359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11789 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:17070554-17071156 Neighboring gene RNA, U6 small nuclear 767, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A molecular compendium of genes expressed in multiple myeloma. Claudio JO, et al. Blood, 2002 Sep 15. PMID 12200383

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Clone Names

  • AC104024.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146886.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104024, BF173999
    Related
    ENST00000419151.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    16988329..16990176
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    16934410..16936257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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