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LOC105371406 uncharacterized LOC105371406 [ Homo sapiens (human) ]

Gene ID: 105371406, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105371406
Gene description
uncharacterized LOC105371406
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105371406 in Genome Data Viewer
Location:
1q21.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (149733615..149778743)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (148857702..148902889)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene transfer RNA-Gly (CCC) 6-1 Neighboring gene tRNA-Val (anticodon CAC) 1-7 Neighboring gene PDE4DIP pseudogene 7 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:149711484-149712064 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:149712065-149712644 Neighboring gene tRNA-Asn (anticodon GTT) 8-1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:149719079-149720019 Neighboring gene ubiquitin conjugating enzyme E2 D4 (putative) pseudogene Neighboring gene tRNA-Arg (anticodon CCT) 8-1 Neighboring gene MPRA-validated peak406 silencer Neighboring gene uncharacterized LOC124904411 Neighboring gene H2B clustered histone 18 Neighboring gene Fc gamma receptor Ia Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:149764669-149765433 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1653 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1654 Neighboring gene H3 clustered histone 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    149733615..149778743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007066595.1 RNA Sequence

  2. XR_007066596.1 RNA Sequence

  3. XR_002958361.2 RNA Sequence

  4. XR_007066594.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    148857702..148902889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070704.1 RNA Sequence

  2. XR_007070706.1 RNA Sequence

  3. XR_007070705.1 RNA Sequence

  4. XR_007070703.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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