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HSD17B2-AS1 HSD17B2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105371363, updated on 10-Oct-2023

Summary

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Official Symbol
HSD17B2-AS1provided by HGNC
Official Full Name
HSD17B2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56281
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
16q23.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (82044336..82066766, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (88108043..88130476, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene phospholipase C gamma 2 Neighboring gene NANOG hESC enhancer GRCh37_chr16:82009174-82009740 Neighboring gene RN7SK pseudogene 176 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:82011207-82011762 Neighboring gene uncharacterized LOC112268169 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11225 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11226 Neighboring gene short chain dehydrogenase/reductase family 42E, member 1 Neighboring gene hydroxysteroid 17-beta dehydrogenase 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:82103975-82105174 Neighboring gene MT-CYB pseudogene 28 Neighboring gene MT-ND6 pseudogene 28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A long non-coding RNA as a direct vitamin D target transcribed from the antisense strand of the human HSD17B2 locus. Kanemoto Y, et al. Biosci Rep, 2022 May 27. PMID 35510872, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • AS-HSD17beta2
  • RP11-510J16.5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    82044336..82066766 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_933797.3 RNA Sequence

  2. XR_933796.3 RNA Sequence

  3. XR_007065140.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    88108043..88130476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086705.1 RNA Sequence

  2. XR_007086707.1 RNA Sequence

  3. XR_007086706.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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