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LINC02131 long intergenic non-protein coding RNA 2131 [ Homo sapiens (human) ]

Gene ID: 105371350, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02131provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2131provided by HGNC
Primary source
HGNC:HGNC:52991
See related
Ensembl:ENSG00000261154 AllianceGenome:HGNC:52991
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
16q23.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (77590885..77610678)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (83647011..83666811)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:77322970-77324169 Neighboring gene uncharacterized LOC124903727 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_45289 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:77341323-77342522 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 18 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:77468627-77469127 Neighboring gene uncharacterized LOC105376775 Neighboring gene NANOG hESC enhancer GRCh37_chr16:77535256-77535757 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:77574962-77575540 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_45434 Neighboring gene Sharpr-MPRA regulatory region 41 Neighboring gene uncharacterized LOC107984878 Neighboring gene nudix hydrolase 7 Neighboring gene vesicle amine transport 1 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184319.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092724
    Related
    ENST00000563289.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    77590885..77610678
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    83647011..83666811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases