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LINC02178 long intergenic non-protein coding RNA 2178 [ Homo sapiens (human) ]

Gene ID: 105371248, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02178provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2178provided by HGNC
Primary source
HGNC:HGNC:53040
See related
Ensembl:ENSG00000261092 AllianceGenome:HGNC:53040
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
16q12.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (50390916..50395133, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (56188784..56193012, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (50424827..50429044, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene adenylate cyclase 7 Neighboring gene Sharpr-MPRA regulatory region 2137 Neighboring gene microRNA 6771 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:50347343-50348542 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:50353005-50354204 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10815 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10816 Neighboring gene bromodomain containing 7 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7481 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7482 Neighboring gene Sharpr-MPRA regulatory region 13482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10817 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:50430839-50432038 Neighboring gene uncharacterized LOC124903770 Neighboring gene Sharpr-MPRA regulatory region 11329 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:50488443-50488943 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7483 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7484 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7485 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10818 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:50512805-50513407 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:50540111-50540756 Neighboring gene uncharacterized LOC124903772

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146572.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007493
    Related
    ENST00000566876.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    50390916..50395133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    56188784..56193012 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases