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LINC01731 long intergenic non-protein coding RNA 1731 [ Homo sapiens (human) ]

Gene ID: 105371226, updated on 22-Oct-2024

Summary

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Official Symbol
LINC01731provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1731provided by HGNC
Primary source
HGNC:HGNC:52519
See related
Ensembl:ENSG00000274020 AllianceGenome:HGNC:52519
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01731 in Genome Data Viewer
Location:
1q21.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (148271879..148281223, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (146526153..146535489)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (147744009..147753329, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:147735767-147736426 Neighboring gene Sharpr-MPRA regulatory region 3868 Neighboring gene RNA, variant U1 small nuclear 22 Neighboring gene tRNA-Gln (anticodon CTG) 4-1 Neighboring gene long intergenic non-protein coding RNA 2806 Neighboring gene tRNA-His (anticodon GTG) 1-3 Neighboring gene uncharacterized LOC105371225 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:147753452-147754308 Neighboring gene tRNA-His (anticodon GTG) 1-4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183738.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC239809, AC245100
    Related
    ENST00000760879.1

  2. NR_183739.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC239809, AC245100
    Related
    ENST00000760881.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    148271879..148281223 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    146526153..146535489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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