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LINC02195 long intergenic non-protein coding RNA 2195 [ Homo sapiens (human) ]

Gene ID: 105371152, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02195provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2195provided by HGNC
Primary source
HGNC:HGNC:53058
See related
Ensembl:ENSG00000236481 AllianceGenome:HGNC:53058
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
16p12.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (26584759..26595449, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (26861987..26872617, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371150 Neighboring gene uncharacterized LOC102723536 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:26761011-26761512 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:26761513-26762012 Neighboring gene Sharpr-MPRA regulatory region 9783 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:26996855-26997503 Neighboring gene uncharacterized LOC105371153 Neighboring gene uncharacterized LOC105371154

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC002331.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    26584759..26595449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_950950.3 RNA Sequence

    Related
    ENST00000702025.1

  2. XR_950949.4 RNA Sequence

    Related
    ENST00000443373.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    26861987..26872617 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086998.1 RNA Sequence

  2. XR_007086997.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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