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LINC02164 long intergenic non-protein coding RNA 2164 [ Homo sapiens (human) ]

Gene ID: 105371066, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02164provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2164provided by HGNC
Primary source
HGNC:HGNC:53025
See related
AllianceGenome:HGNC:53025
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
16p13.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (5213595..5221665, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (5243281..5251351, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984828 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:5173257-5173758 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:5173759-5174258 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:5184682-5185456 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:5185457-5186232 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10351 Neighboring gene MPRA-validated peak2477 silencer Neighboring gene uncharacterized LOC105371067 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:5262989-5263709 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:5286836-5288035 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7175 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:5298918-5299751 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:5300840-5301508 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 14 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:5302176-5302843 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:5302844-5303510 Neighboring gene 40S ribosomal protein S24-like Neighboring gene VPS51 pseudogene 1 Neighboring gene RPS3A pseudogene 48 Neighboring gene RNA binding fox-1 homolog 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    5213595..5221665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_933033.2 RNA Sequence

  2. XR_933032.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    5243281..5251351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086835.1 RNA Sequence

  2. XR_007086834.1 RNA Sequence

Nucleotide Protein
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