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LOC105370878 uncharacterized LOC105370878 [ Homo sapiens (human) ]

Gene ID: 105370878, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105370878
Gene description
uncharacterized LOC105370878
See related
Ensembl:ENSG00000306630
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105370878 in Genome Data Viewer
Location:
15q23
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (70296062..70297886, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (68118826..68121709, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984734 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:70432131-70432636 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:70433141-70433644 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70472929-70473512 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70473513-70474096 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70479256-70479756 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70482961-70483463 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:70488483-70489266 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9675 Neighboring gene RNA, U6 small nuclear 745, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70505448-70506324 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70542989-70543572 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9677 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6608 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9678 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9679 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9680 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9681 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70558987-70559640 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9682 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70561356-70562034 Neighboring gene Sharpr-MPRA regulatory region 9099 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70584795-70585294 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9685 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9684 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9683 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70593533-70594034 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70615294-70615813 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70636737-70637238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70654349-70654848 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70670319-70670820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70670821-70671320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70687219-70687723 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70690391-70690891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70698815-70699316 Neighboring gene uncharacterized LOC124903519 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70719956-70720463 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:70727798-70728001 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9686 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9687 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70752651-70753150 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9688 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9689 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9691 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9692 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70785141-70785685 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70795833-70796358 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:70796359-70796882 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9696 Neighboring gene long intergenic non-protein coding RNA 2205

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    70296062..70297886 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_932424.3 RNA Sequence

    Related
    ENST00000819865.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    68118826..68121709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085664.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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