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LINC02299 long intergenic non-protein coding RNA 2299 [ Homo sapiens (human) ]

Gene ID: 105370646, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02299provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2299provided by HGNC
Primary source
HGNC:HGNC:53218
See related
Ensembl:ENSG00000258979 AllianceGenome:HGNC:53218
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02299 in Genome Data Viewer
Location:
14q32.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (96741191..96790613)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (90972919..91022407)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (97207528..97256950)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene RN7SK pseudogene 108 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8989 Neighboring gene uncharacterized LOC105370645 Neighboring gene NANOG hESC enhancer GRCh37_chr14:97142464-97143129 Neighboring gene NANOG hESC enhancer GRCh37_chr14:97160138-97160738 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8990 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8991 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:97207194-97207694 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6057 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:97221641-97222451 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8992 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6058 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:97264045-97264576 Neighboring gene VRK serine/threonine kinase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8993 Neighboring gene long intergenic non-protein coding RNA 618

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146552.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133168, AL137786
    Related
    ENST00000556669.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    96741191..96790613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    90972919..91022407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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