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CCDC88C-DT CCDC88C divergent transcript [ Homo sapiens (human) ]

Gene ID: 105370625, updated on 22-Oct-2024

Summary

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Official Symbol
CCDC88C-DTprovided by HGNC
Official Full Name
CCDC88C divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55438
See related
Ensembl:ENSG00000258798 AllianceGenome:HGNC:55438
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See CCDC88C-DT in Genome Data Viewer
Location:
14q32.12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (91418246..91424859)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (85643486..85650099)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (91884590..91891203)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 88C Neighboring gene uncharacterized LOC107984673 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:91838097-91838709 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8911 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr14:91841845-91842517 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8912 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91843867-91844540 Neighboring gene uncharacterized LOC105370624 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6025 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91848585-91849375 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91849376-91850165 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91853480-91854308 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91854309-91855135 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8913 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91864835-91865466 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8914 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91866728-91867357 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8916 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8917 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8918 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8920 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6026 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91884645-91885289 Neighboring gene COX assembly mitochondrial protein homolog Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8921 Neighboring gene uncharacterized LOC124903361 Neighboring gene protein phosphatase 4 regulatory subunit 3A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8922 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8923 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:91963914-91964077 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:91975254-91975905 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91975906-91976556 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6030

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184261.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133153

  2. NR_184262.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133153
    Related
    ENST00000557524.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    91418246..91424859
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    85643486..85650099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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