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LINC02330 long intergenic non-protein coding RNA 2330 [ Homo sapiens (human) ]

Gene ID: 105370611, updated on 10-Oct-2023

Summary

Official Symbol
LINC02330provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2330provided by HGNC
Primary source
HGNC:HGNC:53250
See related
Ensembl:ENSG00000258770 AllianceGenome:HGNC:53250
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02330 in Genome Data Viewer
Location:
14q31.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (87634379..87655294, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (81854989..81875905, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (88100723..88121638, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370608 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:87599502-87600701 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:87621174-87621674 Neighboring gene NANOG hESC enhancer GRCh37_chr14:87623147-87623726 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:87636358-87637056 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:87652958-87653633 Neighboring gene NANOG hESC enhancer GRCh37_chr14:87701004-87701521 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:87706805-87707606 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:87726633-87727391 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:87809385-87810584 Neighboring gene long intergenic non-protein coding RNA 2296 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:87896478-87897677 Neighboring gene NANOG hESC enhancer GRCh37_chr14:88228569-88229110 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:88263144-88263835 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:88296681-88297225 Neighboring gene Sharpr-MPRA regulatory region 1922 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_38563 Neighboring gene uncharacterized LOC124903355 Neighboring gene shieldin complex subunit 2 pseudogene 2 Neighboring gene galactosylceramidase

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146551.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    DB048201
    Related
    ENST00000557784.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    87634379..87655294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    81854989..81875905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)