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LINC02826 long intergenic non-protein coding RNA 2826 [ Homo sapiens (human) ]

Gene ID: 105370057, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02826provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2826provided by HGNC
Primary source
HGNC:HGNC:54357
See related
Ensembl:ENSG00000275212 AllianceGenome:HGNC:54357
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
12q24.32
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (125983523..126043480)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (125992320..126052290)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene CTAGE family member 9 pseudogene Neighboring gene long intergenic non-protein coding RNA 939 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:126467800-126468487 Neighboring gene uncharacterized LOC105370058 Neighboring gene uncharacterized LOC105370056 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:126535879-126537078 Neighboring gene long intergenic non-protein coding RNA 2359 Neighboring gene NANOG hESC enhancer GRCh37_chr12:126592791-126593330 Neighboring gene uncharacterized LOC107984447 Neighboring gene transmembrane protein 132C pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183612.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005186, AC005858
    Related
    ENST00000642407.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    125983523..126043480
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    125992320..126052290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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