U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105370003 uncharacterized LOC105370003 [ Homo sapiens (human) ]

Gene ID: 105370003, updated on 17-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
LOC105370003
Gene description
uncharacterized LOC105370003
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC105370003 in Genome Data Viewer
Location:
12q24.21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (115373511..115763065, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (115351891..115743243, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903081 Neighboring gene NANOG hESC enhancer GRCh37_chr12:115596667-115597168 Neighboring gene NANOG hESC enhancer GRCh37_chr12:115636884-115637385 Neighboring gene MPRA-validated peak1981 silencer Neighboring gene uncharacterized LOC124903082 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:115722922-115723464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:115723465-115724005 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7078 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:115778674-115779873 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4897 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7079 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7080 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7081 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7082 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7083 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:115813067-115813567 Neighboring gene Sharpr-MPRA regulatory region 1364 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4898 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:115912063-115913262 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7085 Neighboring gene Sharpr-MPRA regulatory region 2221 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:115945721-115946321 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr12:115949721-115950428 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7087 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_24966 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7086 Neighboring gene uncharacterized LOC105370002 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:116061414-116061930 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 7 Neighboring gene Sharpr-MPRA regulatory region 9136 Neighboring gene RNA, 7SL, cytoplasmic 865, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr12:116237066-116237280 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:116247500-116248699 Neighboring gene small nucleolar RNA SNORD56 Neighboring gene long intergenic non-protein coding RNA 2463 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:116306786-116307286 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:116307287-116307787 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:116308592-116309122 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:116309123-116309651 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:116329236-116329946 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:116399381-116399880 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:116435821-116436322 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:116436323-116436822 Neighboring gene mediator complex subunit 13L Neighboring gene RNA, U6 small nuclear 1188, pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    115373511..115763065 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_945389.3 RNA Sequence

  2. XR_945388.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    115351891..115743243 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083100.1 RNA Sequence

  2. XR_007083099.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials