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LINC02399 long intergenic non-protein coding RNA 2399 [ Homo sapiens (human) ]

Gene ID: 105369891, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02399provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2399provided by HGNC
Primary source
HGNC:HGNC:53326
See related
Ensembl:ENSG00000257725 AllianceGenome:HGNC:53326
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02399 in Genome Data Viewer
Location:
12q21.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (89947693..89949726)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (89929578..89931611)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (90341470..90343503)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984543 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4699 Neighboring gene RNA, U6 small nuclear 148, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6711 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6713 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:90277501-90278426 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:90313523-90314022 Neighboring gene uncharacterized LOC105369890 Neighboring gene bromodomain and WD repeat domain containing 1 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6714 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:90359698-90360238 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:90484856-90485458 Neighboring gene uncharacterized LOC105369892 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6715 Neighboring gene long intergenic non-protein coding RNA 2392

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135019.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX090745
    Related
    ENST00000547094.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    89947693..89949726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    89929578..89931611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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