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LOC105369879 uncharacterized LOC105369879 [ Homo sapiens (human) ]

Gene ID: 105369879, updated on 17-Sep-2024

Summary

Gene symbol
LOC105369879
Gene description
uncharacterized LOC105369879
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LOC105369879 in Genome Data Viewer
Location:
12q21.32
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (87330739..87332321)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (87312075..87313657)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (87724516..87726098)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene MGAT4 family member C Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:87157635-87158136 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:87158137-87158636 Neighboring gene microRNA 3059 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:87332316-87332892 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:87332893-87333469 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:87337946-87338648 Neighboring gene uncharacterized LOC105369878 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6696 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6697 Neighboring gene ribosomal protein L23a pseudogene 68 Neighboring gene uncharacterized LOC107984478 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:87756845-87757346 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:87815167-87816366 Neighboring gene uncharacterized LOC105369880

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135020.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079459, BG196883

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    87330739..87332321
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    87312075..87313657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)