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LINC02394 long intergenic non-protein coding RNA 2394 [ Homo sapiens (human) ]

Gene ID: 105369841, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02394provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2394provided by HGNC
Primary source
HGNC:HGNC:53321
See related
AllianceGenome:HGNC:53321
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
12q21.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (74022080..74049981)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (73999365..74027277)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 1012, pseudogene Neighboring gene U8 small nucleolar RNA Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:74163268-74164467 Neighboring gene long intergenic non-protein coding RNA 2445 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:74371981-74372553 Neighboring gene MPRA-validated peak1834 silencer Neighboring gene long intergenic non-protein coding RNA 2882 Neighboring gene SURP and G-patch domain containing 1 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:74564879-74565379 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:74685765-74686413 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:74686414-74687061 Neighboring gene VENT homeobox pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187486.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090015

  2. NR_187487.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090015

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    74022080..74049981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    73999365..74027277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases