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LINC02445 long intergenic non-protein coding RNA 2445 [ Homo sapiens (human) ]

Gene ID: 105369840, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02445provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2445provided by HGNC
Primary source
HGNC:HGNC:53377
See related
AllianceGenome:HGNC:53377
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
12q21.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (73758657..73846177)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (73735985..73823496)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein L31 pseudogene 48 Neighboring gene RNA, U6 small nuclear 1012, pseudogene Neighboring gene U8 small nucleolar RNA Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:74163268-74164467 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:74371981-74372553 Neighboring gene long intergenic non-protein coding RNA 2394 Neighboring gene MPRA-validated peak1834 silencer Neighboring gene long intergenic non-protein coding RNA 2882 Neighboring gene SURP and G-patch domain containing 1 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:74564879-74565379

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    73758657..73846177
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007063369.1 RNA Sequence

  2. XR_945092.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    73735985..73823496
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083472.1 RNA Sequence

  2. XR_007083471.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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