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PARP11-AS1 PARP11 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105369609, updated on 10-Oct-2023

Summary

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Official Symbol
PARP11-AS1provided by HGNC
Official Full Name
PARP11 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40103
See related
Ensembl:ENSG00000256862 AllianceGenome:HGNC:40103
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 3.2), lymph node (RPKM 0.7) and 2 other tissues See more
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Genomic context

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Location:
12p13.32
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (3870172..3910382)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (3876834..3917053)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984495 Neighboring gene poly(ADP-ribose) polymerase family member 11 Neighboring gene OTUD4 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4143 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:3983014-3983534 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:3983535-3984054 Neighboring gene uncharacterized LOC105369608 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:4053989-4054502 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:4099402-4099924 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:4099925-4100447 Neighboring gene uncharacterized LOC105369611 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:4127463-4128060 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:4128061-4128656 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:4132239-4132836 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:4132837-4133432 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:4134031-4134626 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:4134627-4135224

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183432.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005842, AC084375

  2. NR_183433.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084375
    Related
    ENST00000668261.1

  3. NR_183435.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084375
    Related
    ENST00000545163.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    3870172..3910382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    3876834..3917053
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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